Abstract
A comprehensive understanding of the structure and functioning of continental aquatic ecosystems is crucial for the effective conservation and sustainable use of water and hydrobiological resources in Colombia, a country renowned for its exceptional biodiversity and abundant water reserves. This study examines the biological arrangements and the environmental processes that structure freshwater bodies in various Colombian regions, analyzes the probable underlying causes, and suggests avenues for further research. Physicochemical variables were recorded in situ, and water samples were collected for nutrient analysis. Periphytic algae and aquatic macroinvertebrates were sampled from 26 lentic and 80 lotic ecosystems across different Andean, trans-Andean, and cis-Andean regions between 2005 and 2022. Data analysis involved classification (UPGMA) and ordination (PCA, UMAP, NMDS, LDA), which led to several significant findings: 1) The phycoperiphyton and macroinvertebrate assemblages showed a characteristic relationship with environmental factors, mirroring the environmental conditions of the aquatic ecosystems; 2) the physicochemical factors successfully classified different aquatic systems based on their specific geographical areas, emphasizing clear regional distinctions; 3) lentic systems exhibited more pronounced regional differences than lotic systems, implying that still-water environments may be more sensitive to local ecological effects, and 4) some physicochemical characteristics and biological composition correspondences were observed among aquatic systems in different regions, suggesting potential shared influences or similar environmental conditions affecting them. Based on these general limnological patterns, a comprehensive conceptual framework is proposed that clarifies the interactions among these factors. Potential future research topics have been identified to enhance the understanding of the structure and dynamics of these aquatic systems.
References
Allan, J. D. & Castillo, M. M. (2007). Stream ecology. Structure and function of running waters, 2nd ed. Springer.
Baena-Salazar, D., Fuentes-Hernández, J., Pino-Reyes, L., Marín-Durán, S., Horta-Pérez, S., Fonseca-González, W. (2020). Contexto Regional Andino. Observatorio Regional ODS, Universidad de los Andes. https://hdl.handle.net/1992/47782
Benito, X., Fritz. S. C., Steinitz-Kannan, Vélez, M. I., McGlue, M. M. (2018a). Lake regionalization and diatom metacommunity structuring in tropical South America. Ecology and Evolution, 8(16), 7865-7878. https://doi.org/10.1002/ece3.4305
Benito, X., Fritz. S. C., Steinitz-Kannan, M., Tapia, P. M., Kelly, M. A., Lowell, T. V. (2018b). Geo-climatic factors drive diatom community distribution in tropical South American freshwaters. Journal of Ecology, 106, 1660-1672. https://doi.org/10.1111/1365-2745.12934
Brown, B. L., Swan, C. M., Auerbach, D. A., Grant, E. H. C., Hitt, N. P., Maloney, K. O., Patrick, C. (2011). Metacommunity theory as a multispecies, multiscale framework for studying the influence of river network structure on riverine communities and ecosystems. Journal of the North American Benthological Society, 30(1), 310-327. https://doi.org/10.1899/10-129.1
Calderón, J. & Benavides, A. M. (2022). Deforestación y fragmentación en las áreas más biodiversas de la Cordillera Occidental de Antioquia (Colombia). Biota Colombiana, 23(1), e942. https://doi.org/10.21068/2539200X.942
Celis, L. V., Rangel-Ch, O., Minorta-Cely, V. (2019). Suelos de la Orinoquia colombiana: aspectos físicos y químicos con base en la revisión bibliográfica. In O. Rangel-Ch. (Ed.), Colombia Diversidad Biótica XIV. La región de la Orinoquia de Colombia (pp. 207-236). Universidad Nacional de Colombia, Facultad de Ciencias, Instituto de Ciencias Naturales.
Chacón, N., Herrera, R., Méndez, C., Bastianoni, A., Quintero-Torres, E. (2017). Mechanisms involved in soil ammonium production in a Mauritia flexuosa palm swamp community. Wetlands, 38(3), 641-646. https://doi.org/10.1007/s13157-017-0979-0
Chapin, F. S., Matson, P. A., Vitousek, P. M. (2011). Principles of terrestrial ecosystem ecology, 2nd ed. Springer.
Chará, J., Pedraza, G., Giraldo, L., Hincapié, D. (2007). Efecto de los corredores ribereños sobre el estado de quebradas en la zona ganadera del río La Vieja, Colombia. Agroforestería en las Américas, 45, 72-78. https://repositorio.catie.ac.cr/bitstream/handle/11554/7728/Efecto_de_los_corredores.pdf?sequence=2&isAllowed=y
Chen, X., Yan, Z., Li, S., Yao, M. (2025). Advancing aquatic biodiversity assessments of invertebrates using eDNA metabarcoding: A systematic evaluation of primers for marine and freshwater communities. Methods in Ecology and Evolution, 16, 2408-2430. https://doi.org/10.1111/2041-210X.70152
Choy, O., Constantian, G., Griffin, J., Pak, C. (2023). Relationship between river water flow rate, periphyton abundance and macroinvertebrate communities. California Ecology and Conservation Research, 7(2), 1-14. https://doi.org/10.21973/N3DW9D
Coesel, F. M., Duque, S. R., Arango, G. (1988). Distributional patterns in some Neotropical desmid species (Algae, Chlorophyta) in relation to migratory bird routes. Revue d’Hydrobiologie Tropicale, 21(3), 197-205.
Colmenares, F., Román-García, L., Sánchez, J. M., Ramírez, J. C. (2018). Diagnostic structural features of NW South America: Structural cross sections based upon detail field transects. In F. Cediel and S. P. Shaw RP (Eds.), Geology and Tectonics of Northwestern South America: The Pacific-Caribbean-Andean Junction (pp. 651–670). Springer.
Cuenca-Cambronero, M., Courtney-Mustaphi, C. J., Greenway, R., Heiri, O., Hudson, C. M., King, L., Lemmen, K. D., Moosmann, M., Muschick, M., Ngoepe, N., Seehausen, O., Matthews, B. (2022). An integrative paleolimnological approach for studying evolutionary processes. Trends in Ecology & Evolution, 37(6), 488-496. https://doi.org/10.1016/j.tree.2022.01.007
Donato, J. (1998). Los sistemas acuáticos de Colombia: síntesis y revisión. In E. Guerrero (Ed.), Una aproximación a los humedales en Colombia (pp. 31-47). UICN-Fondo FEN.
Donato-Rondón, J. (2022). Decálogo de impactos ambientales: geografía de las transformaciones en sistemas acuáticos de Colombia. Universidad Nacional de Colombia, Sede Bogotá, Facultad de Ciencias.
Donato, J. & Galvis, G. (2008). Tipología de ríos colombianos. In J. Donato (Ed.), Ecología de un río de montaña de los Andes colombianos (Río Tota, Boyacá) (pp. 27-51). Universidad Nacional de Colombia, Facultad de Ciencias.
Dudgeon, D. (Ed.). (2008). Tropical stream ecology. Academic Press.
Dueñas-Jiménez, H. & Montalvo-Jónsson, J. (2020). Neoproterozoic records of the Llanos Orientales Basin, Colombia. In J. Gómez and D. Mateus–Zabala (Eds.), The Geology of Colombia, Volume 1 Proterozoic - Paleozoic (pp. 91–99). Servicio Geológico Colombiano. https://doi.org/10.32685/pub.esp.35.2019.05
Edmond, J. M., Palmer, M. R., Measures, C. I., Brown, E. T., Huh, Y. (1996). Fluvial geochemistry of the eastern slope of the northeastern Andes and its foredeep in the drainage of the Orinoco in Colombia and Venezuela. Geochimica et Cosmochimica Acta, 60(16), 2949-2974. https://doi.org/10.1016/0016-7037(96)00142-1
Elosegi, A. & Sabater, S. (Eds.). (2009). Conceptos y técnicas en ecología fluvial. Fundación BBVA.
Esteves, F. A. (Ed.). (2011). Fundamentos de Limnologia, 3ª ed. Interciência.
Evtimova, V. V. & Donohue, I. (2016). Water-level fluctuations regulate the structure and functioning of natural lakes. Freshwater Biology, 61(2), 251-264. https://doi.org/10.1111/fwb.12699
Galloway, J. N. & Cowling, E. B. (1978). The effects of precipitation on aquatic and terrestrial ecosystems: a proposed precipitation chemistry network. Journal of the Air Pollution Control Association, 28(3), 229-235. https://doi.org/10.1080/00022470.1978.10470594
Gao, G. & Qiu, J. (2025). Landscape pattern and aquatic ecosystems: emerging trends and future directions. Current Landscape Ecology Reports, 10, 3. https://doi.org/10.1007/s40823-025-00105-z
Gibbs, R. J. (1970). Mechanisms controlling world water chemistry. Science, 170(3962), 1088-1090. https://doi.org/10.1126/science.170.3962.1088
Gómez, J., Nivia, A., Montes, N. E., Jiménez, D. M., Tejada, M. L., Sepúlveda, J., Osorio, J. A., Gaona, T., Diederix, H., Uribe, H., Mora, M. (Eds.). (2007). Mapa Geológico de Colombia. Escala 1:2’800.000, 2 ed. INGEOMINAS.
Gómez-Tapias, J., Núñez-Tello, A., Mateus-Zabala, D., Alcárcel-Gutiérrez, F. A., Lasso-Muñoz, R. M., Marín-Rincón, E., Marroquín-Gómez, M. P. (2020). Physiographic and geological setting of the Colombian territory. In Gómez Tapias, J. & D. Mateus-Zabala (Eds.), The Geology of Colombia, Volume 1 Proterozoic - Paleozoic (pp. 1-16). Servicio Geológico Colombiano, Publicaciones Geológicas Especiales. https://doi.org/10.32685/pub.esp.35.2019.01
González-Cuéllar, F. & Obregón-Neira, N. (2013). Self-organizing maps of Kohonen as a river clustering tool within the methodology for determining regional ecological flows ELOHA. Journal Ingeniería y Universidad: Engineering for Development, 17(2), 311-3. https://doi.org/10.11144/Javeriana.iyu17-2.makc
González-Orozco, C. E. (2021). Biogeographical regionalisation of Colombia: a revised area taxonomy. Phytotaxa, 484(3), 247-260. https://doi.org/10.11646/phytotaxa.484.3.1
González-Trujillo, J. D., Donato-Rondón, J. C., Muñoz, I., Sabater, S. (2019). Historical processes constrain metacommunity structure by shaping different pools of invertebrate taxa within the Orinoco basin. Diversity and Distributions, 26(1), 49-61. https://doi.org/10.1111/ddi.12996
Hammer, Ø., Harper, D. A. T., Ryan, P. D. (2001). PAST: Paleontological Statistics Software Package for Education and Data Analysis. Palaeontologia Electronica, 4, 9 p. http://palaeoelectronica.org/2001_1/past/issue1_01.htm
Hauer, R. & Lamberti, G. (Eds.). (2007). Methods in stream ecology. Academic Press.
He, S., Wang, B., Chen, K., Soininen, J. (2023). Patterns in aquatic metacommunities are associated with environmental and trait heterogeneity. Freshwater Biology, 68(1), 91-102. https://doi.org/10.1111/fwb.14011
Horváth, Z., Vad, C. F., Ptacnik, R. (2016). Wind dispersal results in a gradient of dispersal limitation and environmental match among discrete aquatic habitats. Ecography, 39(8), 726-732. https://doi.org/10.1111/ecog.01685
Hutchinson, G. E. (1957). A treatise on limnology. Volume I. Geography and physics of lakes. John Wiley & Sons.
Instituto de Hidrología, Meteorología y Estudios Ambientales (IDEAM). (2013). Zonificación y codificación de unidades hidrográficas e hidrogeológicas de Colombia. https://www.minambiente.gov.co/wp-content/uploads/2021/10/MEMORIAS-MAPA-ZONIFICACIONHIDROGRAFICA.pdf
Instituto de Hidrología, Meteorología y Estudios Ambientales (IDEAM). (2023). Estudio Nacional del Agua 2022. Ideam. https://www.ideam.gov.co/sites/default/files/prensa/boletines/2024-08-27/estudio_nacional_del_agua_2022.pdf
Instituto de Hidrología, Meteorología y Estudios Ambientales (IDEAM) & Instituto de Investigaciones Marinas y Costeras José Benito Vives de Andréis (INVEMAR). (2021). Protocolo de monitoreo y seguimiento del agua. http://documentacion.ideam.gov.co/openbiblio/bvirtual/023773/PROTOCOLO_MONITOREO_AGUA_IDEAM.pdf
Irving, E. (1975). Structural Evolution of the Northernmost Andes, Colombia. Geological Survey professional paper 846. U.S. Government Publishing Office – Instituto Nacional de Investigaciones Geológico-Mineras.
Jaramillo-Robledo, A. & Chaves-Córdoba, B. (2000). Distribución de la precipitación en Colombia analizada mediante conglomeración estadística. Revista Cenicafé, 51(2), 102-113. https://www.cenicafe.org/es/publications/arc051%2802%29102-113.pdf
Jiménez-Segura, L., Restrepo-Ángel, J. D., Hernández-Serna, A. (2022). Drivers for the artisanal fisheries production in the Magdalena River. Frontiers in Environmental Science, 10, 866575. https://doi.org/10.3389/fenvs.2022.866575
Kochanova, E., Nair, A., Sukhikh, N., Väinölä, R., Husby, A. (2021). Patterns of cryptic diversity and phylogeography in four freshwater copepod crustaceans in European lakes. Diversity, 13, 448. https://doi.org/10.3390/d13090448
Lampert, W. & Sommer, U. (2007). Limnoecology. The ecology of lakes and streams. 2nd ed. Oxford University Press.
Leroy, B., Dias, M. S., Giraud, E., Hugueny, B., Jézéquel, C., Leprieur, F., Oberdorff, T., Tedesco, P. A. (2018). Global biogeographical regions of freshwater fish species. Journal of Biogeography, 46, 2407-2419. https://doi.org/10.1111/jbi.13674
Lewis, W. M. Jr. (1987). Tropical limnology. Annual Review of Ecology and Systematics, 18, 159-184.
Lozano-Peña, S., Vásquez-Moscoso, C. A., Rivera-Rondón, C. A., Zapata, A. M., Ortiz-Moreno, M. L. (2019). Efecto de la vegetación riparia sobre el fitoperifiton de humedales en la Orinoquía colombiana. Acta Biológica Colombiana, 24(1), 67-85. http://dx.doi.org/10.15446/abc.v24n1.69086
Macario-González, L., Cohuo, S., Hoelzmann, P., Pérez, L., Elías-Gutiérrez, M., Caballero, M., Oliva, A., Palmieri, M., Álvarez, M. R., Schwalb, A. (2022). Geodiversity influences limnological conditions and freshwater ostracode species distributions across broad spatial scales in the northern Neotropics. Biogeosciences, 19, 5167-5185. https://doi.org/10.5194/bg-19-5167-2022
Malagón-Castro, D. (2003). Ensayo sobre tipología de suelos colombianos. Énfasis en génesis y aspectos ambientales. Revista de la Academia Colombiana de Ciencias Exactas, Físicas y Naturales, 27(104), 319-341. https://doi.org/10.18257/raccefyn.27(104).2003.2082
Margalef, R. (1983). Limnología. Omega.
Martínez-Román, N., Epele, L. B., Manzo, L. M., Grech, M. G., Archangelsky, M. (2023). Beetle mania: Understanding pond aquatic beetles diversity patterns through a multiple-facet approach. Heliyon, 9(9), e19666. https://doi.org/10.1016/j.heliyon.2023.e19666
Mesa, L. M., Corzo, G., Hernández-Manrique, O. L., Lasso, C. A., Galvis, G. (2016). Ecorregiones dulceacuícolas de Colombia: una propuesta para la planificación territorial de la región trasandina y parte de las cuencas del Orinoco y Amazonas. Biota Colombiana, 17(2), 62-88. https://doi.org/10.21068/C2016.v17n02a06
Mora-Polanco, A., Sánchez-Calderón, L., Mac-Quhae-Romero, C., Visáez-Salazar, F., Calzadilla, M. (2008). Geoquímica de los ríos morichales de los llanos orientales Venezolanos. Interciencia, 33(10), 717-724. http://ve.scielo.org/scielo.php?script=sci_arttext&pid=S0378-18442008001000005&lng=es&tlng=es
Mueller, M., Pander, J., Geist, J. (2013). Taxonomic sufficiency in freshwater ecosystems: effects of taxonomic resolution, functional traits, and data transformation. Freshwater Science, 32(3), 762-778. https://doi.org/10.1899/12-212.1
Mushet, D. M., Alexander, L. C., Bennett, M., Schofield, K., Christensen, J. R., Ali, G., Pollard, A., Fritz, K., Lang, M. W. (2019). Differing modes of biotic connectivity within freshwater ecosystem mosaics. Journal of the American Water Resources Association, 55(2), 307-317. https://doi.org/10.1111/1752-1688.12683
Naranjo, L. G., Andrade, G. I., Ponce de León, E. (1999). Humedales interiores de Colombia: bases técnicas para su conservación y uso sostenible. Instituto de Investigación de Recursos Biológicos Alexander von Humboldt, Ministerio del Medio Ambiente.
Payne, A. I. (1986). The ecology of tropical lakes and rivers. John Wiley & Sons.
Peletz, R., Kisiangani, J., Bonham, M., Ronoh, P., Delaire, C., Kumpel, E., Marks, S., Khush, R. (2018). Why do water quality monitoring programs succeed or fail? A qualitative comparative analysis of regulated testing systems in sub-Saharan Africa. International Journal of Hygiene and Environmental Health, 221(6), 907–920. https://doi.org/10.1016/j.ijheh.2018.05.010
Pinilla, G. & Guillot, G. (1997). Regionalización de ambientes acuáticos con base en sus atributos tróficos, físicos y químicos. Geotropica, 2, 21-31.
Pinilla, G. (2017). Prácticas de limnología. Guías de campo y laboratorio. Universidad Nacional de Colombia.
Plata-Días, Y. (2016). Tipología de ríos de Colombia basada en gradientes ambientales y la estructura del ensamble de diatomeas. [Tesis de Maestría]. Universidad Industrial de Santander. https://noesis.uis.edu.co/server/api/core/bitstreams/251ea203-3bdf-448e-8927-61dddafb6358/content
Prado, P. E., Modenutti, B., Aranguren-Riaño, N., Balseiro, E., Samanez, I., Campero, M., Fernández, C. E., Rivera-Rondón, C. A., Carvajal-Vallejos, F. M., López-Paría, D., Herrera-Martínez, Y., de los Ríos-Escalante, P., Steinitz-Kannan, M. J. (2024). Andean Lakes: a proposal for lake districts. Inland Waters, 14, 1-19. https://doi.org/10.1080/20442041.2024.2379147
Restrepo, D. J. & Kjerfve, B. (2004). The Pacific and Caribbean rivers of Colombia: Water discharge, sediment transport and dissolved loads. In L. D. Lacerda, R. E. Santelli, E. K. Duursma, & J. J. Abrão (Eds.), Environmental Geochemistry in Tropical and Subtropical Environments (pp. 169-187). Springer Verlag. https://doi.org/10.1007/978-3-662-07060-4_14
Ricaurte, L. F., Patiño, J. E., Restrepo-Zambrano, D. F., Arias-G, J. C., Acevedo, O., Aponte, C., Medina, R., González, M., Rojas, S., Flórez, C., Estupiñan-Suárez, L. M., Jaramillo, U., Santos, A. C., Lasso, C. A., Duque-Nivia, A. A., Restrepo-Calle, S., Vélez, J. I., Caballero-Acosta, J. H., Duque, S. R., … Junk, W. J. (2019). A classification system for Colombian wetlands: an essential step forward in open environmental policy-making. Wetlands, 39, 971-990. https://doi.org/10.1007/s13157-019-01149-8
Roldán, G. (2020). Revisión histórica de la limnología en Colombia. Revista de la Academia Colombiana de Ciencias Exactas, Físicas y Naturales, 44(171), 303-328. https://doi.org/10.18257/raccefyn.1056
Roldán, G. & Ramírez, J. (Eds.). (2022). Fundamentos de limnología neotropical, 3a ed. Universidad de Antioquia, Universidad Católica de Oriente, Academia Colombiana de Ciencias Exactas, Físicas y Naturales.
Salazar-Castellanos, D., Meza-Salazar, A. M., Guevara, G. (2020). Macroinvertebrados y pérdida de masa de hojas de Eucalyptus sp. y Tibouchina lepidota en una quebrada altoandina con influencia minera (Manizales, Colombia). Revista de la Academia Colombiana de Ciencias Exactas, Físicas y Naturales, 44(171), 593-605. https://doi.org/10.18257/raccefyn.1059
Salgado, J., Shurin, J. B., Vélez, M. I., Link, A., Lopera-Congote, L., González-Arango, C., Jaramillo, F., Åhlén, I., de Luna, G. (2022). Causes and consequences of recent degradation of the Magdalena River basin, Colombia. Limnology and Oceanography Letters, 7(6), 451-465. https://doi.org/10.1002/lol2.10272
Sánchez, F. D., Jaramillo, J., Verdugo, N. (2010). Agua superficial. Caracterización y análisis de la oferta. In IDEAM, Estudio Nacional del Agua 2010 (pp. 54-110). Instituto de Hidrología, Meteorología y Estudios Ambientales.
Scott, D. A. & Jones, T. A. (1995). Classification and inventory of wetlands: a global overview. Vegetatio, 118, 3-16. https://doi.org/10.1007/BF00045186
Sioli, H. (Ed.). (1984). The Amazon. Limnology and landscape ecology of a mighty tropical river and its basin. Monographiae Biologicae. Dr. W. Junk Publishers.
Soranno, P. A., Cheruvelil, K. S., Webster, K. E., Bremigan, M. T., Wagner, T., Stow, C. A. (2010). Using landscape limnology to classify freshwater ecosystems for multi-ecosystem management and conservation. BioScience, 60(6), 440-454. https://doi.org/10.1525/bio.2010.60.6.8
The Inkscape Project. (2022). Inkscape. http://www.inkscape.org (consulted on 23 November 2024).
Tundisi, J. G. & Matsumura-Tundisi, T. (2011). Limnology. CRC Press.
Vélez, M. I., Salgado, J., Brenner, M., Hooghiemstra, H., Escobar, J., Boom, A., Bird, B., Curtis, J. H., Temoltzin-Loranca, Y., Patiño, L. F., González-Arango, C., Metcalfe, S. E., Simpson, G. L., Velásquez, C. (2021). Novel responses of diatoms in Neotropical mountain lakes to indigenous and post-European occupation. Anthropocene, 34, 100294. https://doi.org/10.1016/j.ancene.2021.100294
Viana, D. S., Santamaría, L., Figuerola, J. (2016). Migratory birds as global dispersal vectors. Trends in Ecology & Evolution, 31(10), 763-775. https://doi.org/10.1016/j.tree.2016.07.005
Welch, P. S. (1952). Limnology. 2nd ed. McGraw-Hill.
Wetzel, R. (1975). Limnology. W. B. Saunders.
Zapata, A., Rivera-Rondón, C. A., Valoyes, D., Muñoz-López, C. L., Mejía-Rocha, M., Catalán, J. (2021). Páramo lakes of Colombia: an overview of their geographical distribution and physicochemical characteristics. Water, 13(16), 2175. https://doi.org/10.3390/w13162175

This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.
Copyright (c) 2025 Revista de la Academia Colombiana de Ciencias Exactas, Físicas y Naturales

